PK û.] META-INF/PK ».] O:jjMETA-INF/MANIFEST.MFManifest-Version: 1.0 Ant-Version: Apache Ant 1.10.12 Created-By: 1.8.0_202-b08 (Oracle Corporation) PK QZorg/PK QZ org/autoplot/PK QZorg/autoplot/datasource/PK QZorg/autoplot/datasource/jython/PK QZorg/autoplot/inline/PK QZtest/PK QZڹZZMETA-INF/build.txtbuild.timestamp: build.user.name: build.svnurl: $URL$ build.svnrevision: $Revision$ PK QZ9-րAMETA-INF/org.autoplot.datasource.DataSourceEditorPanel.extensionsorg.autoplot.datasource.jython.JythonEditorPanel jyds org.autoplot.datasource.jython.JythonExtensionDataSourceEditorPanel sps spd wdc tfcat org.autoplot.inline.InlineDataSourceEditorPanel inline PK ƻ[*EZ=META-INF/org.autoplot.datasource.DataSourceFactory.extensionsorg.autoplot.datasource.jython.JythonDataSourceFactory jyds org.autoplot.datasource.jython.JythonExtensionDataSourceFactory sps spd wdc tfcat npy org.autoplot.inline.InlineDataSourceFactory inline PK QZttapplyLambda.jydsxx= dindgen( 20 ) + randomn( 0, 20 ) / 5.0 yy= applyLambda( xx, lambda x : x - java.lang.Math.floor(x) ) result= yyPK QZѓccmcGetAce.jyds# demo of how to query page and get result from next page. # See http://ccmc.gsfc.nasa.gov/requests/GetInput/get_ace_K.php from org.das2.datum import TimeParser str= getParam( 'timerange', '2012-04-17T00:00:00//2012-04-17T21:57:00', 'timerange to load' ) tr= DatumRangeUtil.parseTimeRange(str) tf= TimeParser.create('$Y/$m/$d $H:$M:$S') str_start= tf.format( tr.min(), None ) str_stop= tf.format( tr.max(), None ) import string projected='T' addshift= 0 import httplib, urllib parms= { 'str_start': str_start, 'str_stop': str_stop, 'projected':'T', 'fb':33, 'addshift':0, 'latest_year':2012, 'latest_month':4, 'latest_day':17, 'earliest_year':2005, 'earliest_month':3, 'earliest_day':18, 'latest_hour':21, 'latest_min':57 } parms = urllib.urlencode(parms) headers = {"Content-type": "application/x-www-form-urlencoded", "Accept":"text/html", 'User-Agent':'Autoplot/2012' } baseurl= 'ccmc.gsfc.nasa.gov' conn = httplib.HTTPConnection(baseurl) url = "/cgi-bin/requests/GetInput/get_ace_K.cgi" conn.request("POST", url, parms, headers) response = conn.getresponse() sdata = response.read() # "data" variable name causes problems i1= string.find( sdata, '' ) msg= sdata if ( i2>-1 ): msg= sdata[0:i2] raise Exception(msg) print '----------' print i1+10, i2 print '----------' #print sdata[0:100] #

ACE K Data Formatted for Runs on Request

#

Click 20% value at index 4 plus 80% value at index 3 iss= interpolate( yy, iff ) result= iss PK QZrinterpolateRank2.jyds# another demo of rank 2 interpolation AA= ones(2,2) AA[0,0]= 0 AA[1,1]= 0 f1= linspace( 0, 1, 10 ) f2= ones( 10 ) ff0= outerProduct( f1,f2 ) ff1= outerProduct( f2,f1 ) result= interpolate( AA, ff0, ff1 ) PK QZ/3 99 lambda.jydsfrom java.lang import Math from java.lang import System xx= dindgen( 200000 ) yy= applyLambda( xx, lambda x : x+5 ) t0= System.currentTimeMillis() zz= applyLambda( xx, yy, lambda x,y : Math.atan2( y,x ) ) t1= System.currentTimeMillis() zz2= atan2( yy, xx ) t2= System.currentTimeMillis() print t2-t1, t1-t0 PK QZS linfit.jyds# demos writing a new function "smoothfit" yy(xx) is a noisy # function. This smooths the function, and does a fit at the ends. m= 0.79 b= 3.8 sig= 0.5 nn= 100 # do a boxcar on the data, and finish the ends with a fit # size must be odd def smoothfit( xx, yy, size ): xxsmooth= xx yysmooth= smooth( yy, size ) fit= LinFit( xx[0:size], yy[0:size] ) yfit= xx[0:size] * fit.b + fit.a yysmooth[0:size/2]= yfit[0:size/2] fit= LinFit( xx[-size:], yy[-size:] ) yfit= xx[-size:] * fit.b + fit.a yysmooth[-size/2:]= yfit[-size/2:] return yysmooth xx= linspace( -20, 20, nn ) yy= xx * m + b + randn( nn ) * sig yy.putProperty( 'DEPEND_0', xx ) sig= ones(nn) from org.virbo.dsutil import LinFit fit= LinFit( xx, yy, sig ) print fit.a, fit.b fitxx= linspace( -20, 20, nn ) fityy= fitxx * fit.b + fit.a fityy.putProperty( 'DEPEND_0', fitxx ) smoothyy= smooth( yy, 11 ) smoothfityy= smoothfit( xx, yy, 11 ) PK QZ5Mgg logicFun.jyds# this demos some of the logical operators. Note the operations return "1.0" # to indicate true, "0.0" to indicate false. For input, all tests should # use 0 to mean false, non-zero to mean true. d= findgen(2000) l1= d .gt( 100 ) l2= d .lt( 1900 ) l3= l1 .and( l2 ) l4= l1 .or( l2 ) l5= not( l3 ) # this demoes a problem where this isn't going to Ops.not. PK QZTg z++ mash2.jyds# shows how to modify a dataset. This used to be a much simpler script # but now we're more fussy about units. from org.virbo.dataset import ArrayDataSet from org.virbo.dataset.DataSetUtil import asDataSet data= getDataSet( 'http://cdaweb.gsfc.nasa.gov/opendap/hyrax/genesis/gim/3dl2_gim/2003/genesis_3dl2_gim_20030501_v01.cdf.dds?Proton_Density' ) data= ArrayDataSet.copy(data) # convert to mutable dataset #r= where( data .lt( 3 ) ) # units conversion error t= asDataSet( 3, data.property(QDataSet.UNITS) ) r= where( data .lt( t ) ) data[r]= 3 PK QZE mashup.jyds# shows how two datasets can be multiplied to make a new dataset. # timetags (and fill, though there is none) are preserved through the operation. ds1= getDataSet( 'http://cdaweb.gsfc.nasa.gov/data/ace/swepam/level_2_cdaweb/swe_k0/2011/ac_k0_swe_20110117_v01.cdf?He_ratio' ) ds2= getDataSet( 'http://cdaweb.gsfc.nasa.gov/data/ace/swepam/level_2_cdaweb/swe_k0/2011/ac_k0_swe_20110117_v01.cdf?Np' ) He= ds2 * ds1 He.putProperty( 'TITLE', 'Ace SWE Helium Density' ) PK QZt.8 mathFun.jydsresult1= ( dindgen(100)/100*3 + 1.2 ) result1= 10**result1 result2= dindgen(100)/5 - 10.0 result2= exp( -1 * result2 * result2 ) result3= abs( sin( dindgen(1000)/10 ) ) result= result3 PK QZ8qfvv metadata.jyds# demos a few items of metadata that can be set. # see http://www.autoplot.org/QDataSet#DataSet_Attributes result= rand( 20,20,20 ) result[:,0,0]= dindgen(20) result[:,3,6]= 0 result[0,:,4]= 0 result[0,14,:]= 0 result.putProperty( QDataSet.TITLE, 'this is my data' ) result.putProperty( QDataSet.FILL_VALUE, 0. ) result.putProperty( QDataSet.RENDER_TYPE, 'nnSpectrogram' )PK QZGh monitor.jyds# demos use of the progress monitor which is provided to scripts # as the variable "monitor". Note too that switching variables when # plotting, like from "?result" to "?h", doesn't reload--results # are cached. from time import sleep; from java.lang import System; n= 10000 result= zeros( n ) dep0= zeros( n ) monitor.setTaskSize( n ) monitor.started() t0= System.currentTimeMillis() for i in xrange( 0,n ): if monitor.isCancelled(): break monitor.setTaskProgress(i) dt= System.currentTimeMillis() - t0 d= total( randn( 1000 ) ) result[i]= d dep0[i]= i monitor.finished() result.putProperty( 'DEPEND_0', dep0 ) h= histogram( result, -100,100,1 ) PK ]bkaWW5org/autoplot/datasource/jython/JythonDataSource.class4           ?                     ?                ?  !" #$ % & ' () * C+ C, -. d/ d0 C1 C23 4 567 8 C9:;< - = >? @ A B CDEFG HIJ K -LMNO PQ R ST UV UWX yY yZ [ 5\] ^_`abcdef g hi jk lm n o #p 5qr s tuv wx y z {| } ~      -    ]         1T \  1 1    3           1 1   C   d  5     d   h          listenerLjava/beans/ExceptionListener;metadataLjava/util/Map; Signature5Ljava/util/Map; PARAM_SCRIPTLjava/lang/String; ConstantValuePARAM_TIMERANGEPARAM_RESOURCE_URIloggerLjava/util/logging/Logger; notCheckedTsbZinterp#Lorg/python/util/PythonInterpreter;tsb5Lorg/autoplot/datasource/capability/TimeSeriesBrowse; cacheDateLjava/util/Date;cacheUrl$assertionsDisabledI(Ljava/net/URI;Lorg/autoplot/datasource/jython/JythonDataSourceFactory;)VCodeLineNumberTableLocalVariableTable jythonScriptLjava/io/File;tsb1ALorg/autoplot/datasource/jython/JythonDataSourceTimeSeriesBrowse;exLjava/lang/Exception;this1Lorg/autoplot/datasource/jython/JythonDataSource;uriLjava/net/URI;factory8Lorg/autoplot/datasource/jython/JythonDataSourceFactory; StackMapTable getScript()Ljava/io/File; ExceptionsnextExecA(Ljava/io/LineNumberReader;[Ljava/lang/String;)Ljava/lang/String;sLjava/lang/StringBuilder;sss1readerLjava/io/LineNumberReader;nextLine[Ljava/lang/String;stestmSgetInlineDataSet'(Ljava/net/URI;)Lorg/das2/qds/QDataSet;resLorg/das2/qds/QDataSet;resultLorg/python/core/PyObject;  getDataSet@(Lorg/das2/util/monitor/ProgressMonitor;)Lorg/das2/qds/QDataSet;entryReferenceCacheEntry InnerClasses;5Ljava/util/Map;IX<  getMetadata8(Lorg/das2/util/monitor/ProgressMonitor;)Ljava/util/Map;^(Lorg/das2/util/monitor/ProgressMonitor;)Ljava/util/Map;"(Ljava/net/URI;)Ljava/lang/String;params2 resourceDate (Ljava/net/URI;)Ljava/util/Date;srcuseCache(Ljava/net/URI;)ZLjava/io/IOException; satisfies(Ljava/lang/String;)ZLjava/net/URISyntaxException;surlresetURI(Ljava/lang/String;)Vreset()V SourceFileJythonDataSource.java 0 &' () *+ ,- .*org/autoplot/datasource/capability/Caching   FG     3org/autoplot/datasource/capability/TimeSeriesBrowsejava/text/ParseExceptionjava/io/IOException $%    /org/autoplot/datasource/jython/JythonDataSourcescript  java/net/URLjava/lang/String 0)org/das2/util/monitor/NullProgressMonitor 0  java/lang/StringBuilder def ifelse      !" #$org/python/core/PyList% &'org/das2/qds/QDataSet () * =>+ , - ./   01 2inline 34 java/net/URI YZtrue&org/autoplot/datasource/ReferenceCacheenableReferenceCachefalse5 67 89 :; <= >arg_0 ? @A BCD EF GH Ib JK aLHgarbage collector got the data before a non-weak reference could be made MN OPmiss {0} QR S\)referenceCache doesn''t know the URI: {0}*reference cache in use, {0} is loading {1}java/lang/Object b> QTFloading U V WXrunning script {0} {1} initialize Jython interpreter...$done initializing Jython interpretermonitor YZ)java/util/ConcurrentModificationExceptionWavoiding strange concurrent modification bug that occurs within Jython on the server... 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( 0@A ) GB GCD EF GG HIJKLMNO :PQRSTU InnerClasses needTimeRangeZSCHEME_EVENT_LISTLjava/lang/String; ConstantValue SCHEME_Y_VS_TSCHEME_EVENT_LIST_COLORSschemeSINGLE_TEXTFIELD_DELIMS[Ljava/lang/String; addButtonLjavax/swing/JButton; dataMashUp1*Lorg/autoplot/jythonsupport/ui/DataMashUp;deleteSelectedButtondirectionsLabelLjavax/swing/JLabel;editorTextPane1.Lorg/autoplot/jythonsupport/ui/EditorTextPane;editorTextPane2examplesButtonjLabel1jLabel2jLabel3jPanel1Ljavax/swing/JPanel;jPanel2jPanel3jPanel4 jScrollPane1Ljavax/swing/JScrollPane; jScrollPane3 jScrollPane4 jTabbedPane1Ljavax/swing/JTabbedPane;schemeComboBoxLjavax/swing/JComboBox;tableLjavax/swing/JTable;tm%Ljavax/swing/table/DefaultTableModel;programjydstfLjavax/swing/JTextField; mashupUri()VCodeLineNumberTableLocalVariableTablethis1Lorg/autoplot/inline/InlineDataSourceEditorPanel; getDataMashUp,()Lorg/autoplot/jythonsupport/ui/DataMashUp;initComponents jPanel1LayoutLjavax/swing/GroupLayout; jPanel2Layout jPanel4Layout jPanel3LayoutlayoutgetExamplesComboBoxModel0(ILjava/lang/String;)Ljavax/swing/ComboBoxModel;mLjavax/swing/ComboBoxModel;icolI StackMapTableVmaybeFindDelim9(Ljava/lang/String;[Ljava/lang/String;)Ljava/lang/String;ssdsdelimsRaddButtonActionPerformed(Ljava/awt/event/ActionEvent;)Vcb1tf1irijsbLjava/lang/StringBuilder;ssvalsvaldelimevtLjava/awt/event/ActionEvent;ptfs[Ljavax/swing/JTextField;13+WS getValueAt4(Ljavax/swing/table/TableModel;II)Ljava/lang/String;Ljavax/swing/table/TableModel;#deleteSelectedButtonActionPerformedrows[Iirowk rank2TablerankjTabbedPane1StateChanged"(Ljavax/swing/event/ChangeEvent;)VLjavax/swing/event/ChangeEvent;initializeSchemeschemeComboBoxActionPerformedexamplesButtonActionPerformedt1t2t3t4Ljavax/swing/JTextArea;exampleseditorTextPane1FocusGained(Ljava/awt/event/FocusEvent;)VLjava/awt/event/FocusEvent;impl-Lorg/das2/jythoncompletion/ui/CompletionImpl;reject(Ljava/lang/String;)Zuri ExceptionsXprepareM(Ljava/lang/String;Ljava/awt/Window;Lorg/das2/util/monitor/ProgressMonitor;)ZparentLjava/awt/Window;mon'Lorg/das2/util/monitor/ProgressMonitor; toTableModel)(II)Ljavax/swing/table/DefaultTableModel;nrnc:(Ljava/lang/String;I)Ljavax/swing/table/DefaultTableModel;setColumnLabels:([Ljava/lang/String;)Ljavax/swing/table/DefaultTableModel;detectRichEventsList9(Ljava/lang/String;)Ljavax/swing/table/DefaultTableModel;trLorg/das2/datum/DatumRange;i1exLjava/text/ParseException;timeLjava/util/regex/Matcher;mtmLjava/util/regex/Pattern;foundOne[YZ setURI(Ljava/lang/String;)Vamplitt markProblems(Ljava/util/List;)VproblemsLjava/util/List;LocalVariableTypeTable$Ljava/util/List; Signature'(Ljava/util/List;)VgetPanel()Ljavax/swing/JPanel; cellHeightrunLjava/lang/Runnable;ltm[getURI()Ljava/lang/String;drtrstrcolormain([Ljava/lang/String;)Vargsds/Lorg/autoplot/datasource/DataSourceEditorPanel;UequivalentScript&(Ljava/lang/String;)Ljava/lang/String;tt1trp lastIndex access$000S(Lorg/autoplot/inline/InlineDataSourceEditorPanel;Ljavax/swing/event/ChangeEvent;)Vx0x1 access$100P(Lorg/autoplot/inline/InlineDataSourceEditorPanel;Ljava/awt/event/ActionEvent;)V access$200 access$300 access$400 access$500O(Lorg/autoplot/inline/InlineDataSourceEditorPanel;Ljava/awt/event/FocusEvent;)V access$600](Lorg/autoplot/inline/InlineDataSourceEditorPanel;)Lorg/autoplot/jythonsupport/ui/DataMashUp; SourceFile InlineDataSourceEditorPanel.java UV       wx IJ/org/autoplot/inline/InlineDataSourceEditorPanel eventList PL vLjavax/swing/JTabbedPane jkjavax/swing/JPanel abjavax/swing/JComboBox lmjavax/swing/JScrollPane fgjavax/swing/JTable nojavax/swing/JButton ST WTjavax/swing/JLabel _Y XY cb ^Y ]T hg,org/autoplot/jythonsupport/ui/EditorTextPane Z[ eb `Y ig \[ db(org/autoplot/jythonsupport/ui/DataMashUpinlineDataSourceEditorPanel \1jython tab allows short scripts to be constructed ]1org/autoplot/inline/InlineDataSourceEditorPanel$1 w^ _` javax/swing/DefaultComboBoxModeljava/lang/String Event ListEvent List w/ColorsY(X) wa bc1org/autoplot/inline/InlineDataSourceEditorPanel$2 de#javax/swing/table/DefaultTableModel[Ljava/lang/Object;java/lang/ObjectTitle 1Title 2 wf bg hiAdd... j Add a record1org/autoplot/inline/InlineDataSourceEditorPanel$3Delete SelectedDelete selected records1org/autoplot/inline/InlineDataSourceEditorPanel$4 Dataset Type:3Enter a list of times or pointsjavax/swing/GroupLayout wk lmn pq rt uwx ywz {|java/lang/Short {}   r {   {  q  data Enter lines of jython assignments and expressions. Expressions are interpreted as the X values, then Y values, then Z values if specified.javax/swing/SwingConstants  Examples...Example scripts1org/autoplot/inline/InlineDataSourceEditorPanel$51org/autoplot/inline/InlineDataSourceEditorPanel$6  q jython+This shows the equivalent .jy script. A jy script is a Jython script which loads and manipulates data. Often a mash-up is converted to a .jy script, and this unmodifiable editor shows an equivalent script. This can be saved to a .jyds file without the plot command to make a .jyds script. jymash upeventListColors 2014-01-01T01:01Z2014-01-01T01:01:01.000Z0x0000000xA0A0A00xFFFFFF0xFF00000x00FF000x0000FFokayerror"java/lang/IllegalArgumentException bad column. w1.23    pq javax/swing/BoxLayout wjava/awt/FlowLayoutjavax/swing/JTextFieldExamples          Enter Data Pointjavax/swing/JOptionPane java/lang/StringBuilder ,   QR  ;    x      x aHEnter a list of times, colors (0xRRGGBB), and labelsstartendmessage/Enter a list X and Y valuesy_vs_tywhoops x.linspace(0,5*PI,100) sin(linspace(0,5*PI,100))t=linspace(0,5*PI,100) t,sin(t)%createEvent('2014-005',0x00FF00,'On')ds=createEvent('2014-005T12:00/12:10',0x00FF00,'Instrument On') ds=createEvent(ds,'2014-005T13:00/13:10',0xFF0000,'Instrument Off') ds=createEvent(ds,'2014-005T14:00/14:10',0x00FF00,'Instrument On') dsjavax/swing/JTextArea wSineSine With Variable createEventmultiple events wc1org/autoplot/inline/InlineDataSourceEditorPanel$7 wjava/awt/BorderLayoutNorth CenterExample Inline Jython    1org/autoplot/inline/InlineDataSourceEditorPanel$8 w stop1org/autoplot/inline/InlineDataSourceEditorPanel$9 1ds=createEvent\((ds\,)?\'(.*)\'\,(.*)\,\'(.*)\'\)Y  Z      java/text/ParseException-    vap+inline:     &  rL   sLno timerange provided  x text/python   tujavax/swing/DefaultCellEditor w  2org/autoplot/inline/InlineDataSourceEditorPanel$10java/lang/Thread w x x%s/%s  +%s-%s0x   ds=createEvent('%s',%s,'%s') &ds=createEvent(ds,'%s',%s,'%s')&ds &RENDER_TYPE=eventsBar  ]vap+inline:ds=getDataSet('vap+inline:ripples(10)')&ff=getDataSet('vap+inline:ones(10)')&ds-ff  Test Inline Editor    timerange=(.*) timerange='\+' getDataSet('')  ',timerange)=result= plot(result) -org/autoplot/datasource/DataSourceEditorPaneljavax/swing/ComboBoxModeljava/awt/event/ActionEventjava/lang/Exceptionjava/util/regex/Patternjava/util/regex/Matcherjava/lang/RunnablesetNamesetToolTipText4(Lorg/autoplot/inline/InlineDataSourceEditorPanel;)VaddChangeListener%(Ljavax/swing/event/ChangeListener;)V([Ljava/lang/Object;)VsetModel(Ljavax/swing/ComboBoxModel;)VaddActionListener"(Ljava/awt/event/ActionListener;)V*([[Ljava/lang/Object;[Ljava/lang/Object;)V!(Ljavax/swing/table/TableModel;)VsetViewportView(Ljava/awt/Component;)VsetText(Ljava/awt/Container;)V setLayout(Ljava/awt/LayoutManager;)V!javax/swing/GroupLayout$Alignment AlignmentLEADING#Ljavax/swing/GroupLayout$Alignment;createParallelGroup ParallelGroupL(Ljavax/swing/GroupLayout$Alignment;)Ljavax/swing/GroupLayout$ParallelGroup;createSequentialGroupSequentialGroup+()Ljavax/swing/GroupLayout$SequentialGroup;'javax/swing/GroupLayout$SequentialGroupaddContainerGap%javax/swing/GroupLayout$ParallelGroup addComponent=(Ljava/awt/Component;)Ljavax/swing/GroupLayout$ParallelGroup;B(Ljava/awt/Component;III)Ljavax/swing/GroupLayout$SequentialGroup;*javax/swing/LayoutStyle$ComponentPlacementComponentPlacementRELATED,Ljavax/swing/LayoutStyle$ComponentPlacement;addPreferredGapW(Ljavax/swing/LayoutStyle$ComponentPlacement;)Ljavax/swing/GroupLayout$SequentialGroup;M(Ljavax/swing/GroupLayout$Alignment;Z)Ljavax/swing/GroupLayout$ParallelGroup;@(Ljava/awt/Component;III)Ljavax/swing/GroupLayout$ParallelGroup;addGroupGroupJ(Ljavax/swing/GroupLayout$Group;)Ljavax/swing/GroupLayout$SequentialGroup;H(Ljavax/swing/GroupLayout$Group;)Ljavax/swing/GroupLayout$ParallelGroup;?(Ljava/awt/Component;)Ljavax/swing/GroupLayout$SequentialGroup;setHorizontalGroup"(Ljavax/swing/GroupLayout$Group;)VBASELINEaddGap.(III)Ljavax/swing/GroupLayout$SequentialGroup;setVerticalGroupaddTab)(Ljava/lang/String;Ljava/awt/Component;)VsetVerticalAlignment(I)VaddFocusListener!(Ljava/awt/event/FocusListener;)VTRAILINGk(Ljavax/swing/GroupLayout$Alignment;Ljavax/swing/GroupLayout$Group;)Ljavax/swing/GroupLayout$ParallelGroup;equals(Ljava/lang/Object;)Ztrimsplit((Ljava/lang/String;I)[Ljava/lang/String;org/das2/util/LoggerManager logGuiEventgetColumnCount()I(Ljava/awt/Container;I)V setEditable(Z)V getEditor()Ljavax/swing/ComboBoxEditor;javax/swing/ComboBoxEditorgetEditorComponent()Ljava/awt/Component; 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Allow datasets to be encoded within the URI, useful for testing or annotating plots.

PK QZ}ApitchAngleDistribution.jydsangle= linspace( -PI,PI,40 ) rad= linspace( 1, 5, 20 ) dist= copy(ripples( 40, 20 )) dist[0:3,10:]= -1e31 #plotx( angle, rad, dist ) result= link( angle, rad, dist ) result.putProperty( QDataSet.RENDER_TYPE, 'pitchAngleDistribution' ) #plotx( ds, renderType='pitchAngleDistribution' ) PK QZb2sspitchAngleDistribution2.jydsangle= linspace( -PI,PI,32 ) rad= linspace( 1, 5, 30 ) dist= copy(ripples( 400,32, 30 )) tt= timegen( '2014-001T00:00', '1 min', 400 ) dist= putProperty( dist, QDataSet.DEPEND_0, tt ) dist= putProperty( dist, QDataSet.DEPEND_1, angle ) dist= putProperty( dist, QDataSet.DEPEND_2, rad ) result= dist result.putProperty( QDataSet.RENDER_TYPE, 'pitchAngleDistribution' ) PK QZ?m6rank1_dim3.jyds# demonstrates the need for a semantic layer for the data model. Kludgy code in # AP requires special knowledge to get this to work. X,Y,Z should be a dependent # parameter on implicit parameter T. x= randn( 10000 ) y= randn( 10000 ) z= sqrt( x**2 + y**2 ) y.putProperty( QDataSet.DEPEND_0, x ) y.putProperty( QDataSet.PLANE_0, z ) result= y x= randn( 10000 ) y= randn( 10000 ) z= sqrt( x**2 + y**2 ) result2= link( x, y, z ) # this is the new way of doing this, but there's a bug so it's not handled properly. PK QZJOreadTypeSpd.jydsresourceURI= getParam( 'resourceURI', 'file:/home/jbf/project/juno/u/masafumi/20180416/1522678471UT180402061200_HNRAO_1.spd', 'example file to load' ) antenna= getParam( 'antenna', 0, 'the antenna to load when multiple dual antenna file is used.', [0,1] ) #Type SkyPipeHeader # version As String * 10 # Start As Double # Finish As Double # Lat As Double # Lng As Double # MaxY As Double # MinY As Double # TimeZone As Integer # Source As String * 10 # Author As String * 20 # LocalName As String * 20 # Location As String * 40 # Channels As Integer # NoteLength As Long #End Type headerLength= 10 + 6*8 + 2 + 10 + 20 + 20 + 40 + 2 + 4 print headerLength header= getDataSet( 'vap+bin:'+resourceURI+'?byteOffset=0&byteLength=%d' % (headerLength ) ) headerDoubles= getDataSet( 'vap+bin:'+resourceURI+'?type=double&byteOffset=10&byteLength=48') lat= headerDoubles[2] lon= headerDoubles[3] timezone= getDataSet( 'vap+bin:'+resourceURI+'?type=short&byteOffset=58&byteLength=2') timezone= timezone[0] obsauthor= map( chr, map( int, header[70:90] ) ) obsauthor= ''.join(obsauthor) obsauthor= obsauthor.strip() obsname= map( chr, map( int, header[90:110] ) ) obsname= ''.join(obsname) obsname= obsname.strip() obslocation= map( chr, map( int, header[110:150] ) ) obslocation= ''.join(obslocation) obslocation= obslocation.strip() noteLength= getDataSet( 'vap+bin:'+resourceURI+'?recLength=4&type=int&byteOffset=%d&recCount=1' % (headerLength-4) ) noteLength= noteLength[0] print 'noteLength=', noteLength noteUri='vap+bin:'+resourceURI+'?byteOffset=%d&byteLength=%d' % (headerLength, noteLength ) print 'noteUri=', noteUri note= getDataSet( noteUri ) r= where( note.eq(255) ) note[r]= 10 note= map( chr, map( int, note ) ) note= ''.join(note) from java.util import LinkedHashMap meta= LinkedHashMap() istart= note.find('*[[*') print 'istart=', istart meta.put( 'Nones', note[0:istart] ) note= note[istart+4:] note= note[0:-4] note= note.strip() print '===note===' print note print '=======' meta.put( 'LoggedUsingUT', 'False' ) meta.put( 'IntegerSave', 'False' ) meta.put( 'NoTimeStamps', 'False' ) meta.put( 'lat', lat ) meta.put( 'lon', lon ) meta.put( 'ObsAuthor', obsauthor) meta.put( 'ObsName', obsname) meta.put( 'ObsLocation', obslocation) meta.put( 'TimeZone', timezone) sIntegerSave='F' sNoTimeStamps= 'F' iCh2= 0 index= 0 for n in note.split('\n'): if n.startswith('ANTENNATYPE'): meta.put( n[0:11], n[11:] ) elif n.startswith('ANTENNAAZIMUTH'): i= n[14:] meta.put( n[0:14], i ) elif n.startswith('ANTENNAELEVATION'): i= n[16:] meta.put( n[0:16], i ) elif n.startswith('ANTENNAPOLARIZATION'): meta.put( n[0:20], n[20:] ) elif n.startswith('Integer Save'): sIntegerSave='T' meta.put( 'IntegerSave', 'True' ) elif n.startswith('No Time Stamps'): sNoTimeStamps= 'T' meta.put( 'NoTimeStamps', 'True' ) elif n.startswith('Logged Using UT'): meta.put( 'LoggedUsingUT', 'True' ) elif n.startswith('XALABEL'): meta.put( 'XALABEL', n[7:] ) elif n.startswith('YALABEL'): meta.put( 'YALABEL', n[7:] ) elif n.startswith('CH'): iCh2= iCh2+1 meta.put( n[0:4], n[4:] ) elif n.startswith('MetaData_'): label= n[9:] ss= label.split(chr(200)) meta.put( ss[0], ss[1] ) else: indexColon= n.find(': ') if indexColon>-1: meta.put( n[0:indexColon], n[indexColon+2:] ) else: meta.put( 'index%03d'%index , n ) index= index+1 iCh= iCh2 / 2 # 0. Default Format # meta('IntegerSave') == 'False' # meta('NoTimeSamps') == 'False' # [Date] (8 bytes) # [Channel 1 Data] (8 bytes) # [Channel 2 Data] (8 bytes) # 1. Integer Save Format # meta('IntegerSave') == 'True' # meta('NoTimeSamps') == 'False' # [Date] (8 bytes) # [Channel 1 Data] (2 bytes) # [Channel 2 Data] (2 bytes) # 2. No Timestamps Format (non-Integer) # meta('IntegerSave') == 'False' # meta('NoTimeSamps') == 'True' # [Channel 1 Data] (8 bytes) # [Channel 2 Data] (8 bytes) # 3. No Timestamps Format (Integer) # meta('IntegerSave') == 'True' # meta('NoTimeSamps') == 'True' # [Channel 1 Data] (2 bytes) # [Channel 2 Data] (2 bytes) if sNoTimeStamps == 'F': if sIntegerSave == 'F': if iCh == 1: iRecLength= 16 iRecOffset= 8 else: iRecLength= 24 iRecOffset= ([8,16])[antenna] # [Ch 1, Ch 2] else: if iCh == 1: iRecLength= 10 iRecOffset= 8 else: iRecLength= 12 iRecOffset= ([8,10])[antenna] # [Ch 1, Ch 2] tt= getDataSet( 'vap+bin:'+resourceURI+'?recLength=%d&type=double&byteOffset=%d&validMax=1e20&validMin=-1e20' % ( iRecLength, headerLength + noteLength ) ) ds= getDataSet( 'vap+bin:'+resourceURI+'?recLength=%d&type=double&byteOffset=%d&validMax=1e20&validMin=-1e20&recOffset=%d' % ( iRecLength, headerLength + noteLength, iRecOffset ) ) tt= putProperty( tt, QDataSet.UNITS, Units.lookupTimeUnits('days since 1899-12-30T00:00') ) result= link( tt, ds ) else: if sIntegerSave == 'F': iRecLength= 8 else: iRecLength= 2 ds= getDataSet( 'vap+bin:'+resourceURI+'?recLength=%d&type=double&byteOffset=%d&validMax=1e20&validMin=-1e20' % ( iRecLength, headerLength + noteLength ) ) result= ds #e= extent(tt) #print 'extent: ',( e[1]-e[0] ) , ( e[1]-e[0] ) / 19 * 3600 # 19 minutes #plot( ds[-1000:] ) result= putProperty( result, QDataSet.METADATA, meta ) result= putProperty( result, QDataSet.LABEL, meta.get('YALABEL')) #result= putProperty( result, QDataSet.TITLE, meta.get('XALABEL')) result= putProperty( result, QDataSet.TITLE, "Channel %i: %s (%s) @ %s"%(antenna+1,obsname, obsauthor, obslocation)) xds= result.property( QDataSet.DEPEND_0 ) xds.putProperty( QDataSet.LABEL, 'Time (UT)' ) #plot(tt,ds) PK QZereadTypeSps.jydsresourceURI= getParam( 'resourceURI', 'http://www-pw.physics.uiowa.edu/~jbf/autoplot/jyds/formats/radiojove/1522660086180402060700.sps', 'example file to load' ) antenna= getParam( 'antenna', 0, 'the antenna to load when multiple dual antenna file is used.', [0,1] ) #resourceURI='/home/masafumi/Linux/sps_example/150127042000.sps' #Type SkyPipeHeader # version As String * 10 # Start As Double # Finish As Double # Lat As Double # Lng As Double # MaxY As Double # MinY As Double # TimeZone As Integer # Source As String * 10 # Author As String * 20 # LocalName As String * 20 # Location As String * 40 # Channels As Integer # NoteLength As Long #End Type start= getDataSet( 'vap+bin:'+resourceURI+'?recLength=8&type=double&byteOffset=10&recCount=1' ) finish= getDataSet( 'vap+bin:'+resourceURI+'?recLength=8&type=double&byteOffset=18&recCount=1' ) start= putProperty( start[0], QDataSet.UNITS, Units.lookupTimeUnits('days since 1899-12-30T00:00') ) finish= putProperty( finish[0], QDataSet.UNITS, Units.lookupTimeUnits('days since 1899-12-30T00:00') ) headerLength= 10 + 6*8 + 2 + 10 + 20 + 20 + 40 + 2 + 4 header= getDataSet( 'vap+bin:'+resourceURI+'?byteOffset=0&byteLength=%d' % (headerLength ) ) headerDoubles= getDataSet( 'vap+bin:'+resourceURI+'?type=double&byteOffset=10&byteLength=48') lat= headerDoubles[2] lon= headerDoubles[3] timezone= getDataSet( 'vap+bin:'+resourceURI+'?type=short&byteOffset=58&byteLength=2') timezone= timezone[0] obsauthor= map( chr, map( int, header[70:90] ) ) obsauthor= ''.join(obsauthor) obsauthor= obsauthor.strip() obsname= map( chr, map( int, header[90:110] ) ) obsname= ''.join(obsname) obsname= obsname.strip() obslocation= map( chr, map( int, header[110:150] ) ) obslocation= ''.join(obslocation) obslocation= obslocation.strip() noteLength= getDataSet( 'vap+bin:'+resourceURI+'?recLength=4&type=int&byteOffset=%d&recCount=1' % (headerLength-4) ) noteLength= noteLength[0] noteUri='vap+bin:'+resourceURI+'?byteOffset=%d&byteLength=%d' % (headerLength, noteLength ) note= getDataSet( noteUri ) r= where( note.eq(255) ) note[r]= 10 note= map( chr, map( int, note ) ) note= ''.join(note) note= note[4:-4] sDualSpecFile='F' from java.util import LinkedHashMap meta= LinkedHashMap() meta.put( 'lat', lat ) meta.put( 'lon', lon ) meta.put( 'ObsAuthor', obsauthor) meta.put( 'ObsName', obsname) meta.put( 'ObsLocation', obslocation) meta.put( 'TimeZone', timezone) index= 0 for n in note.split('\n'): if n.startswith('HIF'): hif= dataset( float( n[3:] ), Units.hertz ) meta.put( 'HIF', hif ) elif n.startswith('LOWF'): lowf= dataset( float( n[4:] ), Units.hertz ) meta.put( 'LOWF', lowf ) elif n.startswith('SWEEPS'): i= int( n[6:] ) meta.put( 'SWEEPS', i ) elif n.startswith('STEPS'): i= int( n[5:] ) meta.put( 'STEPS', i ) elif n.startswith('DUALSPECFILE'): i= n[12:] sDualSpecFile= n[12:13] meta.put( 'DUALSPECFILE', i ) elif n.startswith('RCP'): i= n[3:] meta.put( 'RCP', i ) elif n.startswith('ANTENNATYPE'): meta.put( n[0:11], n[11:] ) elif n.startswith('ANTENNAAZIMUTH'): i= n[14:] meta.put( n[0:14], i ) elif n.startswith('ANTENNAELEVATION'): i= n[16:] meta.put( n[0:16], i ) elif n.startswith('ANTENNAPOLARIZATION'): meta.put( n[0:20], n[20:] ) elif n.startswith('COLORFILE'): meta.put( n[0:9], n[9:] ) elif n.startswith('COLOROFFSET'): meta.put( n[0:12], n[12:] ) elif n.startswith('COLORGAIN'): meta.put( n[0:10], n[10:] ) elif n.startswith('COLORRES'): # no tag means 10-bit data sDataBit='10-bit' if int(n[8]) == 1: sDataBit='12-bit' meta.put( 'COLORRES', sDataBit ) elif n.startswith('BANNER'): meta.put( n[0:7], n[7:] ) elif n.startswith('RCVR'): meta.put( 'RCVR', n[4:] ) else: meta.put( 'index%03d'%index , n ) index= index+1 #print 'note=', note print 'sDualSpecFile %s'%(sDualSpecFile) print 'byteOffset=%d' % ( headerLength + noteLength ) channelsUri= 'vap+bin:'+resourceURI+'?recLength=2&type=ushort&byteOffset=%d&recCount=1&byteOrder=little' % (headerLength-6) print 'channelsUri=', channelsUri channels= getDataSet( channelsUri ) channels= channels[0] print 'channels=', channels print 'file length should be %d ' % ( headerLength + noteLength + ( 2 + channels*2 ) *621 ) #ds= getDataSet( 'vap+bin:'+resourceURI+'?recLength=16&type=double&byteOffset=%d&validMax=1e20&validMin=-1e20&recOffset=8' % ( headerLength + noteLength ) ) ds= getDataSet( 'vap+bin:'+resourceURI+'?recLength=%d&byteOffset=%d&type=ushort&rank2=0:%d&recOffset=2&byteOrder=big' % ( 2 + channels*2, headerLength + noteLength, channels) ) if ( sDualSpecFile=='T' ): ds= ds[antenna::2] ttag= linspace( start, finish, ds.length() ) #ds= putProperty( ds, QDataSet.METADATA, #tt= putProperty( tt, QDataSet.UNITS, Units.lookupTimeUnits('days since 1900-01-03T00:00') ) #plot( ds[-1000:] ) #plot( 1, tt ) #d= ds[:,::2] print hif, lowf ytags= linspace( hif, lowf, int(channels) ) #plot( ttag, ytags, ds ) result= link( ttag, ytags, ds ) result= putProperty( result, QDataSet.METADATA, meta ) yds= result.property( QDataSet.DEPEND_1 ) yds.putProperty( QDataSet.UNITS,Units.hertz) yds.putProperty( QDataSet.LABEL, 'Frequency (MHz)' ) yds= convertUnitsTo( yds, Units.megaHertz ) xds= result.property( QDataSet.DEPEND_0 ) xds.putProperty( QDataSet.LABEL, 'Time (UT)' ) result= putProperty( result, QDataSet.DEPEND_1,yds) result= putProperty( result, QDataSet.DEPEND_0,xds) result= putProperty( result, QDataSet.TITLE, "%s (%s) @ %s"%(obsname, obsauthor, obslocation)) #plot( 1, ds[:,1::2] ) #plot(tt,ds) PK QZ[ rheology.jyds# Demo of looking at Rheology (science of how materials deform and flow) data produced by Sarah, # Jeremy's wife and perspective Autoplot user. The machine (Malvern Gemini Control-Stress # Rhemometer) produces these ".raw" files which can be parsed and analyzed easily with Autoplot. # This must be run in the "Data Source Context", meaning it only loads data. raw= getDataSet( 'vap+dat:http://sarahandjeremy.net/~jbf/data.backup/examples/dat/sarah/2490lintest90005.raw?skip=31&column=field1' ) freq= 15.47436 nperiod= 1 time= dindgen(512) * nperiod / freq / 512 time.putProperty( QDataSet.UNITS, Units.seconds ) raw.putProperty( QDataSet.DEPEND_0, time ) disp= getDataSet( 'vap+dat:http://sarahandjeremy.net/~jbf/data.backup/examples/dat/sarah/2490lintest90005.raw?skip=31&column=field3' ) disp.putProperty( QDataSet.DEPEND_0, time ) fftraw= magnitude(fft(raw)) fftraw= 2 * fftraw[ 0:fftraw.length()/2 ] # keep only the positive frequencies PK QZ[f ggsetXUnits.jydsresourceURI= getParam( 'resourceURI', 'file:///home/jbf/project/autoplot/data/dat/pw/george/WBR Raw Data 2004-175T00.txt', 'example file to load' ) ds= getDataSet( resourceURI + '?depend0=field1&column=field3' ) dep0= ds.property( QDataSet.DEPEND_0 ) dep0.putProperty( QDataSet.UNITS, Units.milliseconds ) ds.putProperty( QDataSet.DEPEND_0, dep0 ) result= ds PK QZ=uu sliceFun.jyds# Here are some code fragments for testing and demonstrating slicing datasets. #a= randomn( 0, 2000, 30 ) #result= a[:,:] #r2= result[9,:] #result[9,:]= 9 #d= randomn( 0, 1000 ) #print d #s= sort(d) #print d[s] #result= d[s] #a= dindgen( 10 )/5 + 3 a= dindgen( 10 ) a[5]=0 #print a #a[2:5]= 0 #for i in range(10): # print a[i] a= dindgen( 100 )+0 a[::2]= dindgen(50) PK QZ k test/RegexTest.class4 L MN ,OPQ RS MT UV WX YZ [\]^_`a L bcdef ghi ,jklmnopqrstuvwxyz [{|loggerLjava/util/logging/Logger;()VCodeLineNumberTableLocalVariableTablethisLtest/RegexTest;doTest((ILjava/lang/String;Ljava/lang/String;)VnumIregexLjava/lang/String;testpLjava/util/regex/Pattern;smain([Ljava/lang/String;)Vargs[Ljava/lang/String;vnargsargaargfargfp SourceFileRegexTest.java /0} ~ -. %03d: %5s %sjava/lang/Object     \s*([a-z][a-z0-9]*)\s*\s*\'([a-z][a-z0-9]*)\'\s*\s*(\'[^\']+\')\s*\s*([0-9\.\+-eE]+)\s*java/lang/StringBuilder =\s*getParam\(,(,\))?.* \).*^dir= getParam( 'dir', '/home/jbf/temp/ap4/', 'Directory containing builds $Y-$m-$d_$H-$M-$S' ) 67'dir' getParam\(getParam( 'dir' )\s*\'([a-z]+)\'\s*'a new' =getParam\(dir=getParam('dir')dir=getParam('dir','a new')(dir=getParam('dir', ' a new' , ' a new')-dir= getParam( 'dir', '/home/jbf/temp/ap4/' ) 3.4e5 +3.4E-5 +3.4E-5 p2= getParam( 'factor', 3.4 ) org/autoplot/datasource/LogNames apdss.jyds test/RegexTestjava/util/regex/Patterncompile-(Ljava/lang/String;)Ljava/util/regex/Pattern;java/lang/IntegervalueOf(I)Ljava/lang/Integer;matcher3(Ljava/lang/CharSequence;)Ljava/util/regex/Matcher;java/util/regex/Matchermatches()Zjava/lang/Boolean(Z)Ljava/lang/Boolean;java/lang/Stringformat9(Ljava/lang/String;[Ljava/lang/Object;)Ljava/lang/String;java/util/logging/Loggerinfo(Ljava/lang/String;)Vappend-(Ljava/lang/String;)Ljava/lang/StringBuilder;toString()Ljava/lang/String; getLogger.(Ljava/lang/String;)Ljava/util/logging/Logger;!,-./01/*23 45 6712+N,:YSY- SY+S 21342892:;2<;-=>*?; @A1H L MN:Y+,--:Y+,-:Y+,--,Y,Y+,---Y+ ,!Y+ ,-"Y+ ,--# Y+,--$ % & ' Y+,(Y+,-(2Z ! %@&t(+-/2 4639_<?BDFHKGM3HHBCED;BE; ?F; ;G;@=>tH>I01! *+2JKPK QZu.X timasPitchAngleDistribution.jyds# demo pitch angle dist ds= getDataSet('vap+cdfj:ftp://cdaweb.gsfc.nasa.gov/pub/data/polar/timas/timas_h0/1996/po_h0_tim_19961121_v03.cdf?Flux_H',monitor) ds.putProperty( QDataSet.DEPEND_1, linspace( 1., 5., 28 ) ) deg= ds.property(QDataSet.DEPEND_2) deg= deg * PI / 180. deg.putProperty( QDataSet.UNITS, Units.radians ) ds.putProperty( QDataSet.DEPEND_2, deg ) result= ds #ds.putProperty( QDataSet.RENDER_TYPE, 'pitchAngleDistribution' ) # you have to mess with this a bit to get a redraw. PK QZsc^$[ [ wdc_kp_ap.jyds# wdc_kp_ap.jyds # # Reads data from the World Data Center in a format that is beyond the specification of the AsciiTableParser. # Example file: ftp://ftp.ngdc.noaa.gov/STP/GEOMAGNETIC_DATA/INDICES/KP_AP/1942 # getAp=1 read Ap, otherwise read Kp. # see apkp. getAp= getParam( 'getAp', 0 ) apkp= getParam( 'apkp', 'kp', 'read Ap or Kp', ['ap','kp' ] ) if ( apkp=='ap' ): getAp= 1 else: getAp= 0 resourceURI= getParam( 'resourceURI', 'ftp://ftp.ngdc.noaa.gov/STP/GEOMAGNETIC_DATA/INDICES/KP_AP/1942', 'example file to load' ) # Download the file to make it local. Monitor is a progress monitor for the download. afile= getFile( resourceURI, monitor ).toString() # Get the year from the last four characters of the resource name. syear= afile[-4:] fp= open( afile, "r" ) # Import the DataSetBuilder class which is used to build up the dataset. from org.virbo.dsutil import DataSetBuilder timeparser= TimeParser.create( '$Y$m$d' ) timetags= DataSetBuilder( 1, 100 ) # create builders for the data and timetags, allocate 100 records initially. builder= DataSetBuilder( 1, 100 ) #Here is an example line, the first record from the 1942 file: #42 1 1148718 3 71010 3101010 63 2 3 4 4 2 4 4 4 30.10 46 0.03 if ( getAp ): offs= 31 leng= 3 builder.putProperty( QDataSet.NAME, 'Ap' ) builder.putProperty( QDataSet.TITLE, 'Ap' ) else: offs= 12 leng= 2 builder.putProperty( QDataSet.NAME, 'Kp' ) builder.putProperty( QDataSet.TITLE, 'Kp' ) for line in fp: stime= syear + line[2:6] # form YYYYMMDD by adding the year to MMDD in the 2,3,4,and 5th characters base_t2000= timeparser.parse( stime ).getTime( Units.t2000 ) # parse the time and return it in seconds since 2000-01-01T00:00Z. for j in xrange(8): # for j=0,1,2,3,4,5,6,7 i= offs + j*leng d= int( line[i:i+leng] ) timetags.putValue( -1, base_t2000 + 3600 * ( 1.5 + j*3 ) ) # add the offset seconds for each of 8 measurements. builder.putValue( -1, d ) timetags.nextRecord() builder.nextRecord() fp.close() timetags.putProperty( QDataSet.UNITS, Units.t2000 ) # indicate the times are seconds since 2000-01-01T00:00. builder.putProperty( QDataSet.DEPEND_0, timetags.getDataSet() ) # connect the timetags to the data. data= builder.getDataSet() # data is the resultant dataset. 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