package org.autoplot.pds; import gov.nasa.pds.ppi.label.PDSException; import gov.nasa.pds.ppi.label.PDSLabel; import java.io.File; import java.io.FileNotFoundException; import java.io.IOException; import java.net.URI; import java.net.URISyntaxException; import java.net.URL; import java.util.ArrayList; import java.util.Collections; import java.util.LinkedHashMap; import java.util.List; import java.util.Map; import java.util.logging.Level; import java.util.logging.Logger; import javax.xml.parsers.ParserConfigurationException; import javax.xml.xpath.XPath; import javax.xml.xpath.XPathConstants; import javax.xml.xpath.XPathExpressionException; import javax.xml.xpath.XPathFactory; import org.autoplot.datasource.AbstractDataSourceFactory; import org.autoplot.datasource.CompletionContext; import org.autoplot.datasource.DataSetURI; import static org.autoplot.datasource.DataSetURI.fromUri; import org.autoplot.datasource.DataSource; import org.autoplot.datasource.URISplit; import org.das2.datum.LoggerManager; import org.das2.util.monitor.NullProgressMonitor; import org.das2.util.monitor.ProgressMonitor; import org.w3c.dom.Document; import org.w3c.dom.Node; import org.w3c.dom.NodeList; import org.xml.sax.SAXException; /** * Factory for resolving PDS3 URIs. * @author jbf */ public class Pds3DataSourceFactory extends AbstractDataSourceFactory { private static Logger logger= LoggerManager.getLogger("apdss.pds"); @Override public DataSource getDataSource(URI uri) throws Exception { URISplit split= URISplit.parse(uri); if ( split.file.toLowerCase().endsWith(".lbl") ) { return new Pds3DataSource( uri ); } else { return new PdsDataSource( uri ); } } /** * return information about how this data is stored in PDS3DataObject. * @param url URL of label * @param name the object name * @return PDS3DataObject * @throws IOException * @throws PDSException * @throws XPathExpressionException */ public static PDS3DataObject getDataObjectPds3( URL url, String name ) throws IOException, PDSException, XPathExpressionException { Document doc; doc= getDocumentWithImports(url); XPathFactory factory = XPathFactory.newInstance(); XPath xpath = factory.newXPath(); Node table= (Node) xpath.evaluate(String.format("/LABEL/TABLE[1]",name),doc,XPathConstants.NODE); Node column= (Node) xpath.evaluate(String.format("/LABEL/TABLE[1]/COLUMN[NAME='%s']",name),doc,XPathConstants.NODE); FilePointer p= null; if ( table==null || column==null) { table= (Node) xpath.evaluate(String.format("/LABEL/BINARY_TABLE[1]",name),doc,XPathConstants.NODE); column= (Node) xpath.evaluate(String.format("/LABEL/BINARY_TABLE[1]/COLUMN[NAME='%s']",name),doc,XPathConstants.NODE); if ( table!=null ) { String pointer= (String)xpath.evaluate("/LABEL/POINTER[@object='BINARY_TABLE']/text()",doc,XPathConstants.STRING); if ( pointer!=null && pointer.length()>0 ) { p= new FilePointer(url,pointer); } } } if ( table==null || column==null) { table= (Node) xpath.evaluate(String.format("/LABEL/ASCII_TABLE[1]",name),doc,XPathConstants.NODE); column= (Node) xpath.evaluate(String.format("/LABEL/ASCII_TABLE[1]/COLUMN[NAME='%s']",name),doc,XPathConstants.NODE); if ( table!=null ) { String pointer= (String)xpath.evaluate("/LABEL/POINTER[@object='ASCII_TABLE']/text()",doc,XPathConstants.STRING); if ( pointer!=null && pointer.length()>0 ) { p= new FilePointer(url,pointer); } } } if ( table==null || column==null ) { table= (Node) xpath.evaluate(String.format("/LABEL/TIME_SERIES[1]",name),doc,XPathConstants.NODE); column= (Node) xpath.evaluate(String.format("/LABEL/TIME_SERIES[1]/COLUMN[NAME='%s']",name),doc,XPathConstants.NODE); if ( table!=null ) { String pointer= (String)xpath.evaluate("/LABEL/POINTER[@object='TIME_SERIES']/text()",doc,XPathConstants.STRING); if ( pointer!=null && pointer.length()>0 ) { p= new FilePointer(url,pointer); } } } if ( table==null || column==null ) { ///LABEL/FILE/SPREADSHEET/FIELD/NAME/text() table= (Node) xpath.evaluate(String.format("/LABEL/FILE/SPREADSHEET"),doc,XPathConstants.NODE); column= (Node) xpath.evaluate(String.format("/LABEL/FILE/SPREADSHEET/FIELD[NAME='%s']",name),doc,XPathConstants.NODE); if ( table!=null ) { String pointer= (String)xpath.evaluate("/LABEL/FILE/POINTER[@object='SPREADSHEET']/text()",doc,XPathConstants.STRING); if ( pointer!=null && pointer.length()>0 ) { p= new FilePointer(url,pointer); } } } if ( table==null ) { // maybe they are high-rank table= (Node) xpath.evaluate(String.format("/LABEL/TABLE[1]",name),doc,XPathConstants.NODE); if ( table==null ) { throw new IllegalArgumentException("Unable to find table" ); } else { column= (Node) xpath.evaluate(String.format("/LABEL/TABLE[1]/CONTAINER/COLUMN[NAME='%s']",name),doc,XPathConstants.NODE); if ( column==null ) { column= (Node) xpath.evaluate(String.format("/LABEL/TABLE[1]/CONTAINER/CONTAINER/COLUMN[NAME='%s']",name),doc,XPathConstants.NODE); if ( column!=null ) { column= column.getParentNode().getParentNode(); } } else { column= column.getParentNode(); } } } if ( column==null ) { throw new IllegalArgumentException("Unable to find column: "+name ); } PDS3DataObject obj= new PDS3DataObject( doc.getDocumentElement(), table,column); obj.setFilePointer( p ); //obj.description= (String)xpath.evaluate("/DESCRIPTION/text()",dat,XPathConstants.STRING); return obj; } @Override public boolean reject(String suri, List problems, ProgressMonitor mon) { try { URISplit split= URISplit.parse( suri ); Map params= URISplit.parseParams(split.params); String id= params.get("arg_0"); if ( id==null ) id= params.get("id"); if ( id==null ) id= params.get("X"); if ( id==null ) id= params.get("Y"); if ( id==null ) id= params.get("Z"); FilePointer filePointer; File xmlfile = DataSetURI.getFile( split.resourceUri.toURL() ,new NullProgressMonitor()); try { filePointer= getFileResource( split.resourceUri.toURL(), mon); } catch ( IOException | URISyntaxException | ParserConfigurationException | XPathExpressionException | SAXException ex ) { problems.add("uri should point to xml or lblx file"); return true; } DataSetURI.getFile(filePointer.getUrl(),mon ); if ( id==null ) { return true; } else { try { getDataObjectPds3( split.resourceUri.toURL(), id ); return false; } catch ( Exception ex ) { problems.add(ex.getMessage()); return true; } } } catch ( IOException | IllegalArgumentException | PDSException ex ) { logger.log(Level.SEVERE, null, ex); problems.add(ex.getMessage()); return true; } } /** * read in the PDS label, resolving STRUCTURES which are loaded with a pointer. * @param labelUrl the URL of the LABEL file * @return a document model of the LABEL, with imports resolved. * @throws IOException * @throws PDSException */ public static Document getDocumentWithImports( URL labelUrl ) throws IOException, PDSException { logger.entering( "Pds3DataSourceFactory", "getDocumentWithImports", labelUrl ); File xmlfile = DataSetURI.getFile( labelUrl,new NullProgressMonitor()); PDSLabel label = new PDSLabel(); if ( !label.parse( xmlfile.getPath() ) ) { throw new IllegalArgumentException("unable to use file "+labelUrl); } Document doc; doc= label.getDocument(); XPathFactory factory = XPathFactory.newInstance(); XPath xpath = factory.newXPath(); // check for pointers to STRUCTURE, where we will import the content of the file. NodeList structures; try { structures = (NodeList) xpath.evaluate("/LABEL/*/POINTER[@object=\"STRUCTURE\"]",doc,XPathConstants.NODESET); } catch (XPathExpressionException ex) { throw new RuntimeException(ex); } for ( int i=0; ilimit ) { i= desc.lastIndexOf(" ",limit); if ( i==-1 ) i=limit; desc= desc.substring(0,i)+"..."; } } else { if ( i>limit ) { i= desc.lastIndexOf(" ",limit); if ( i==-1 ) i=limit; desc= desc.substring(0,i)+"..."; } else { desc= desc.substring(0,i+1); } } desc= String.join(" ",desc.split("[\\s|\\&\\#13\\;]+")); return desc; } /** * return a list of parameters and their summarized descriptions. The * summaries are the first sentence of the description. * @param url the LBL file location. * @param mon a monitor. * @return a map from id to description of the id. */ private Map getDataObjectNames( URL url, ProgressMonitor mon) throws Exception { Map result= new LinkedHashMap<>(); Document doc= getDocumentWithImports(url); XPathFactory factory = XPathFactory.newInstance(); XPath xpath = factory.newXPath(); // page 4-1 (p53) of https://pds.nasa.gov/datastandards/pds3/standards/sr/StdRef_20090227_v3.8.pdf // https://pds.nasa.gov/datastandards/pds3/standards/sr/AppendixA.pdf NodeList dat= (NodeList) xpath.evaluate("/LABEL/TABLE/COLUMN/NAME/text()",doc,XPathConstants.NODESET); if ( dat.getLength()==0 ) { dat= (NodeList) xpath.evaluate("/LABEL/BINARY_TABLE/COLUMN/NAME/text()",doc,XPathConstants.NODESET); } if ( dat.getLength()==0 ) { dat= (NodeList) xpath.evaluate("/LABEL/ASCII_TABLE/COLUMN/NAME/text()",doc,XPathConstants.NODESET); } if ( dat.getLength()==0 ) { dat= (NodeList) xpath.evaluate("/LABEL/TIME_SERIES/COLUMN/NAME/text()",doc,XPathConstants.NODESET); } if ( dat.getLength()==0 ) { dat= (NodeList) xpath.evaluate("/LABEL/FILE/SPREADSHEET/FIELD/NAME/text()",doc,XPathConstants.NODESET); } for ( int i=0; iJAD_L50_LRS_ELC_ANY_DEF_2016240_V01.DAT } @Override public List getCompletions(CompletionContext cc, ProgressMonitor mon) throws Exception { if ( cc.context.equals(CompletionContext.CONTEXT_PARAMETER_NAME) ) { logger.log(Level.FINE, "getCompletions {0}", cc.resourceURI); DataSetURI.getFile(cc.resourceURI.toURL(),new NullProgressMonitor()); Map result; result = getDataObjectNames(cc.resourceURI.toURL(), mon); List ccresult= new ArrayList<>(); ccresult.add( new CompletionContext( CompletionContext.CONTEXT_PARAMETER_NAME, "", this, "arg_0", "Select parameter to plot", "", false ) ); for ( java.util.Map.Entry e:result.entrySet() ) { String key= e.getKey(); String desc= e.getValue(); CompletionContext cc1= new CompletionContext( CompletionContext.CONTEXT_PARAMETER_NAME, key, this, "arg_0", desc, null, true ); ccresult.add(cc1); } ccresult.add(new CompletionContext(CompletionContext.CONTEXT_PARAMETER_NAME, "X=", "values typically displayed in horizontal dimension")); ccresult.add(new CompletionContext(CompletionContext.CONTEXT_PARAMETER_NAME, "Y=", "values typically displayed in vertical dimension")); ccresult.add(new CompletionContext(CompletionContext.CONTEXT_PARAMETER_NAME, "Z=", "values typically color coded")); return ccresult; } else if ( cc.context==CompletionContext.CONTEXT_PARAMETER_VALUE ) { String parmname= CompletionContext.get( CompletionContext.CONTEXT_PARAMETER_NAME, cc ); if ( parmname.equals("id") || parmname.equals("X") || parmname.equals("Y") || parmname.equals("Z") ) { Map result= getDataObjectNames(cc.resourceURI.toURL(), mon); List ccresult= new ArrayList<>(); ccresult.add( new CompletionContext( CompletionContext.CONTEXT_PARAMETER_VALUE, "", this, "arg_0", "", null, true ) ); for ( java.util.Map.Entry e:result.entrySet() ) { String key= e.getKey(); String desc= e.getValue(); CompletionContext cc1= new CompletionContext( CompletionContext.CONTEXT_PARAMETER_VALUE, key, this, "arg_0", desc, null, true ); ccresult.add(cc1); } return ccresult; } } return Collections.emptyList(); } }