package org.autoplot.pngwalk; import java.awt.RenderingHints; import java.awt.image.BufferedImage; import java.io.FileNotFoundException; import java.io.OutputStream; import java.io.PrintWriter; import java.text.ParseException; import java.util.ArrayList; import java.util.List; import java.util.Locale; import java.util.logging.Level; import java.util.logging.Logger; import javax.imageio.ImageIO; import javax.swing.JOptionPane; import javax.swing.SwingUtilities; import org.das2.components.DasProgressPanel; import org.das2.datum.Datum; import org.das2.datum.DatumRange; import org.das2.datum.DatumRangeUtil; import org.das2.util.DasPNGConstants; import org.das2.util.DasPNGEncoder; import org.das2.datum.TimeParser; import org.das2.datum.Units; import org.das2.datum.UnitsUtil; import org.das2.datum.format.DatumFormatter; import org.das2.datum.format.FormatStringFormatter; import org.das2.util.ArgumentList; import org.das2.util.ExceptionHandler; import org.das2.util.FileUtil; import org.das2.util.monitor.NullProgressMonitor; import org.das2.util.monitor.ProgressMonitor; import org.autoplot.ApplicationModel; import org.autoplot.AutoplotUtil; import org.autoplot.ScriptContext; import org.autoplot.dom.Application; import org.autoplot.dom.Plot; import org.autoplot.state.StatePersistence; import org.das2.qds.DataSetOps; import org.das2.qds.DataSetUtil; import org.das2.qds.QDataSet; import org.das2.qds.SemanticOps; import org.autoplot.datasource.URISplit; import org.das2.qds.ops.Ops; import java.io.File; import java.io.FileWriter; import java.io.IOException; import java.io.BufferedWriter; import java.net.URI; import java.nio.channels.FileChannel; import java.nio.channels.FileLock; import java.nio.file.Path; import java.nio.file.Paths; import java.nio.file.StandardOpenOption; import java.security.KeyManagementException; import java.security.NoSuchAlgorithmException; import java.security.cert.X509Certificate; import java.util.Arrays; import java.util.Iterator; import java.util.LinkedList; import javax.net.ssl.HostnameVerifier; import javax.net.ssl.HttpsURLConnection; import javax.net.ssl.SSLContext; import javax.net.ssl.SSLSession; import javax.net.ssl.TrustManager; import javax.net.ssl.X509TrustManager; import org.autoplot.dom.Options; import org.autoplot.dom.PlotElement; import org.das2.datum.InconvertibleUnitsException; /** * CreatePngWalk makes a sequence of images from a .vap file or the current * state. This is used with PngWalkTool to quickly flip through the images once * they are created. This was once a Python script, but it got complex enough * that it was useful to rewrite it in Java. * * @author jbf */ public class CreatePngWalk { /** * Get the list of times, which can be one of: * This uses params.batchUri to get the URI that is resolved to control the * times. These times then need to be formatted to filenames, or if * params.batchUriName is "$o" then the output filename is explicitly * specified in the last column. * * @param params * @return array of strings: filename: timeRange * @throws IllegalArgumentException * @throws ParseException */ private static String[] getListOfTimes(Params params, List warnings) throws IllegalArgumentException, ParseException { String[] times; if (params.useBatchUri) { try { String uri = params.batchUri; QDataSet timesds = org.autoplot.jythonsupport.Util.getDataSet(uri); times = new String[timesds.length()]; if (params.batchUriName.equals("")) { if (!UnitsUtil.isTimeLocation(SemanticOps.getUnits(timesds))) { if ((QDataSet) timesds.property(QDataSet.DEPEND_0) != null) { timesds = (QDataSet) timesds.property(QDataSet.DEPEND_0); } else if (SemanticOps.isBundle(timesds)) { // See EventsRenderer.makeCanonical timesds = Ops.bundle(DataSetOps.unbundle(timesds, 0), DataSetOps.unbundle(timesds, 1)); } else { throw new IllegalArgumentException("expected events list URI"); } } if (timesds.rank() != 2) { timesds = Ops.createEvents(timesds); } if (timesds.rank() != 2) { throw new IllegalArgumentException("expected bins dataset for times"); } TimeParser tp = TimeParser.create(params.timeFormat); for (int i = 0; i < times.length; i++) { times[i] = tp.format(DataSetUtil.asDatumRange(timesds.slice(i))) + ": " + DataSetUtil.asDatumRange(timesds.slice(i)).toString(); } } else { timesds = Ops.createEvents(timesds); Units tu = ((Units) ((QDataSet) timesds.property(QDataSet.BUNDLE_1)).property(QDataSet.UNITS, 0)); Units eu = ((Units) ((QDataSet) timesds.property(QDataSet.BUNDLE_1)).property(QDataSet.UNITS, 3)); if (uri.endsWith(".txt")) { // hey it's just an orbits file... logger.fine("reading events file to preserve identity of orbits."); for (int i = 0; i < times.length; i++) { String s1 = eu.createDatum(timesds.slice(i).value(3)).toString(); // orbit name String s = s1 + ": " + "orbit:" + uri + ":" + s1; times[i] = s; } } else { logger.fine("reading events file as start/stop times."); for (int i = 0; i < times.length; i++) { times[i] = eu.createDatum(timesds.slice(i).value(3)).toString() + ": " + DatumRange.newDatumRange(timesds.slice(i).value(0), timesds.slice(i).value(1), tu); // TODO: this should be easier to code } } } } catch (Exception ex) { if (ex instanceof IllegalArgumentException) { throw (IllegalArgumentException) ex; } else { throw new IllegalArgumentException(ex); } } } else { times = ScriptContext.generateTimeRanges(params.timeFormat, params.timeRangeStr); } return times; } /** * return true if any data is visible. * * @param dom2 * @return true if some data is visible. */ private static boolean isDataVisible(Application dom2) { DatumRange tr = dom2.getTimeRange(); boolean dataVisible = false; for (PlotElement pe : dom2.getPlotElements()) { QDataSet dsout = pe.getController().getDataSet(); if (dsout == null) { continue; } try { dsout = SemanticOps.trim(dsout, tr, null); } catch (InconvertibleUnitsException ex) { // do nothing--I think it's a non-time-axis TSB. } if (dsout.length() == 0) { continue; } dataVisible = true; break; } return dataVisible; } /** * parameters specifying the creation of a pngwalk. */ public static class Params { /** * output folder for the walk, e.g. /home/user/pngwalk/ */ public String outputFolder = null; /** * timerange to cover for the walk, e.g. 2012 through 2014. */ public String timeRangeStr = null; /** * rescale to show context for each step, e.g. "0%,100%" or * "0%-1hr,100%+1hr" */ public String rescalex = "0%,100%"; /** * autorange dependent dimensions */ public boolean autorange = true; /** * consider autorange flags for each axis. */ public boolean autorangeFlags = true; /** * clone the dom and run on the copy, so the original Autoplot is free. */ public boolean runOnCopy = true; /** * version tag to apply to each image, if non-null */ public String version = null; /** * product name for the walk, e.g. product */ public String product = null; /** * timeformat for the walk, e.g. $Y$m$d */ public String timeFormat = null; /** * Uri that creates an events dataset, like * 'http://emfisis.physics.uiowa.edu/events/rbsp-a/burst/rbsp-a_burst_times_20130201.txt?eventListColumn=3' * or null for automatically generating names based on template. */ public String batchUri = null; /** * if true, use the URI to source the list of events. */ public boolean useBatchUri = false; /** * if non-null, use the name in the event list column instead of the * product and timeFormat. For example, the batch file contains lines * like: 2015-03-05T02:10 2015-03-05T02:14 marsex/event1 so this png * will have the name outputFolder + "marsex/event1" + ".png" This must * be either empty "" or "$o" for now. */ public String batchUriName = ""; /* * if true, the also create thumbs. */ public boolean createThumbs = true; /** * if true, skip over products that appear to be created already. */ public boolean update = false; /** * presently this is png or pdf */ public String outputFormat = "png"; /** * also write a .vap file */ public boolean writeVap = true; /** * check that image contains data. */ public boolean removeNoData = false; @Override public String toString() { return String.format("outputFolder=%s\ntimeRange=%s\nrescalex=%s\nautorange=%s\nversion=%s\nproduct=%s\ntimeFormat=%s\ncreateThumbs=%s\nupdate=%s\n", outputFolder, timeRangeStr, rescalex, autorange, version, product, timeFormat, createThumbs, update); } } private static final Logger logger = org.das2.util.LoggerManager.getLogger("autoplot.pngwalk"); private static BufferedImage myWriteToPng(String filename, Application ldom, int width, int height) throws InterruptedException, FileNotFoundException, IOException { OutputStream out = null; BufferedImage image = null; try { File outf = new File(filename); File parentf = outf.getParentFile(); if (parentf != null && !parentf.exists()) { if (!parentf.mkdirs()) { throw new IllegalArgumentException("failed to make directories " + parentf); } } out = new java.io.FileOutputStream(filename); image = (BufferedImage) ldom.getCanvases(0).getController().getDasCanvas().getImage(width, height); DasPNGEncoder encoder = new DasPNGEncoder(); // 20120525: tested against ImageIO.write comparable time and space. encoder.addText(DasPNGConstants.KEYWORD_CREATION_TIME, new java.util.Date().toString()); encoder.addText(DasPNGConstants.KEYWORD_SOFTWARE, "Autoplot"); encoder.addText(DasPNGConstants.KEYWORD_PLOT_INFO, ldom.getCanvases(0).getController().getDasCanvas().getImageMetadata()); encoder.write(image, out); } finally { if (out != null) { out.close(); } } if (image == null) { throw new IllegalArgumentException("image not assigned, this shouldn't happen."); } return image; } private static int returnCode1 = 0; /** * run the pngwalk for the list of times. The dom argument is copied so the * scientist can continue working while the pngwalk is run. * * @param times list of times to run. If a time contains a ": ", then the * first part is the label and after is the exact time. * @param readOnlyDom the dom to render for each time. * @param params outputFolder and spec. * @param mon progress monitor to provide feedback about the run. * @return 0 if any were successful, 10 otherwise. * @throws IOException * @throws InterruptedException */ public static int doBatch(String[] times, Application readOnlyDom, Params params, ProgressMonitor mon) throws IOException, InterruptedException { return doBatch(Arrays.asList(times).iterator(), times.length, readOnlyDom, params, mon); } /** * run the pngwalk for the list of times. The dom argument is copied so the * scientist can continue working while the pngwalk is run. * * @param times iterator with each time. * @param size size, if known, or -1 if not known. * @param readOnlyDom the dom to render for each time. * @param params outputFolder and spec. * @param mon progress monitor to provide feedback about the run. * @return 0 if any were successful, 10 otherwise. * @throws IOException * @throws InterruptedException */ public static int doBatch(Iterator times, int size, Application readOnlyDom, Params params, ProgressMonitor mon) throws IOException, InterruptedException { final ArrayList pngFilenameArrayThumbs = new ArrayList(); final ArrayList pngFilenameArrayBig = new ArrayList(); final ArrayList timeLabels = new ArrayList(); int returnCodeAll = 10; logger.log(Level.CONFIG, "CreatePngWalk.doBatch with params {0}", params); if (!(params.outputFolder.endsWith("/") || params.outputFolder.endsWith("\\"))) { params.outputFolder = params.outputFolder + "/"; } File outputFolder = new java.io.File(params.outputFolder); if (!outputFolder.exists() && !outputFolder.mkdirs()) { throw new IOException("failed mkdirs: " + outputFolder); } if (!outputFolder.canWrite()) { throw new IOException("unable to write to folder " + outputFolder); } if (params.update) { File f = new java.io.File(outputFolder, params.product + ".lock"); if (!f.exists()) { logger.info("creating lock file so multiple processes can work on pngwalk."); if (!f.createNewFile()) { logger.info("failed to create lock file, some work may be redone."); } } } if (params.createThumbs) { File thumbsFolder = new java.io.File(params.outputFolder, "thumbs400/"); if (!thumbsFolder.exists() && !(thumbsFolder.mkdirs())) { throw new IOException("failed mkdirs: " + thumbsFolder); } if (!thumbsFolder.canWrite()) { throw new IOException("unable to write to folder " + thumbsFolder); } } else { File thumbsFolder = new java.io.File(params.outputFolder, "thumbs400/"); if (thumbsFolder.exists()) { System.err.println("warning: thumbs folder already exists!"); } } int n = size; mon.setTaskSize(n); mon.started(); try { mon.setProgressMessage("initializing child application"); TimeParser tp = TimeParser.create(params.timeFormat); Application dom = (Application) readOnlyDom.copy(); dom.getOptions().syncToAll(readOnlyDom.getOptions(), new ArrayList()); if (!times.hasNext()) { throw new IllegalArgumentException("there must be at least one time"); } String atime = times.next(); try { int ic = atime.indexOf(": "); String exactTime; if (ic > -1) { // rfe batchfile time. exactTime = atime.substring(ic + 2); } else { exactTime = atime; } // set the initial timerange to avoid an extraneous load. if (params.useBatchUri) { DatumRange tr1 = DatumRangeUtil.parseTimeRange(exactTime); dom.setTimeRange(tr1); } else { DatumRange tr1 = tp.parse(exactTime).getTimeRange(); dom.setTimeRange(tr1); } } catch (ParseException ex) { throw new RuntimeException(ex); } Application dom2; int w0, h0; if (params.runOnCopy) { ApplicationModel appmodel = new ApplicationModel(); appmodel.addDasPeersToAppAndWait(); dom2 = appmodel.getDocumentModel(); mon.setProgressMessage("synchronize to this application"); dom2.getCanvases(0).setHeight(dom.getCanvases(0).getHeight()); dom2.getCanvases(0).setWidth(dom.getCanvases(0).getWidth()); w0 = dom2.getCanvases(0).getWidth(); h0 = dom2.getCanvases(0).getHeight(); dom2.getCanvases(0).getController().getDasCanvas().setSize(w0, h0); dom2.getCanvases(0).getController().getDasCanvas().revalidate(); dom2.syncTo(dom, java.util.Arrays.asList("id")); dom2.getController().waitUntilIdle(); dom2.syncTo(dom, java.util.Arrays.asList("id")); // work around bug where someone resets the margin column http://jfaden.net:8080/hudson/job/autoplot-test033/5786/artifact/ dom2.getOptions().syncToAll(readOnlyDom.getOptions(), new ArrayList()); // 1165 grid overlay } else { dom2 = readOnlyDom; w0 = dom2.getCanvases(0).getWidth(); h0 = dom2.getCanvases(0).getHeight(); } ApplicationModel appmodel = dom2.getController().getApplicationModel(); int thumbSize = 400; int thumbH = 0, thumbW = 0; if (params.createThumbs) { double aspect = 1. * w0 / h0; thumbH = (int) (Math.sqrt(Math.pow(thumbSize, 2) / (aspect * aspect + 1.))); thumbW = (int) (thumbH * aspect); } // Write out the vap file to product.vap if (params.writeVap) { mon.setProgressMessage("write " + params.product + ".vap"); logger.log(Level.FINE, "write {0}.vap", params.product); StatePersistence.saveState(new java.io.File(outputFolder, params.product + ".vap"), dom2, ""); } String vap = new java.io.File(outputFolder, params.product + ".vap").toString(); StringBuilder build = new StringBuilder(); build.append(String.format("JAVA -cp autoplot.jar org.autoplot.pngwalk.CreatePngWalk ")); try (PrintWriter ff = new PrintWriter(new FileWriter(new java.io.File(outputFolder, params.product + ".pngwalk")))) { // Write out the parameters used to create this pngwalk in product.pngwalk build.append("--vap=").append(vap).append(" "); build.append("--outputFolder=").append(params.outputFolder).append(" "); ff.println("# set the following line to the location of the pngwalk"); ff.println("baseurl=."); ff.println("product=" + params.product); build.append("--product=").append(params.product).append(" "); ff.println("timeFormat=" + params.timeFormat); build.append("--timeFormat='").append(params.timeFormat).append("' "); if (params.useBatchUri == false) { ff.println("timeRange=" + params.timeRangeStr); build.append("--timeRange='").append(params.timeRangeStr).append("' "); } if (params.batchUriName.equals("$o")) { ff.println("# the filePattern may need editing, depending on extension and subdirectories."); ff.println("filePattern=*.png"); } if (params.useBatchUri) { if (params.batchUri != null && !params.batchUri.equals("")) { ff.println("batchUri=" + params.batchUri); build.append("--batchUri=").append(params.batchUri).append(" "); } if (!params.batchUriName.equals("")) { ff.println("batchUriName=" + params.batchUri); build.append("--batchUriName=").append(params.batchUri).append(" "); } } if (params.rescalex != null && !params.rescalex.equals("0%,100%")) { ff.println("rescalex=" + params.rescalex); build.append("--rescalex=").append(params.rescalex).append(" "); } if (params.autorange) { ff.println("autorange=" + params.autorange); build.append("--autorange=").append(params.autorange).append(" "); } if (params.autorangeFlags) { ff.println("autorangeFlags=" + params.autorangeFlags); build.append("--autorangeFlags=").append(params.autorangeFlags).append(" "); } if (params.version != null && params.version.trim().length() > 0) { ff.println("version=" + params.version); build.append("--version=").append(params.version); } if (!params.outputFormat.equals("png")) { ff.println("outputFormat=" + params.outputFormat); build.append("--outputFormat=").append(params.outputFormat); } } if (!(mon instanceof NullProgressMonitor)) { // only show in interactive session System.err.println(build.toString()); } dom2.getController().waitUntilIdle(); mon.setProgressMessage("making images"); List t0s = new LinkedList<>(); int count = 0; appmodel.setExceptionHandler(new ExceptionHandler() { @Override public void handle(Throwable t) { logger.log(Level.WARNING, null, t); returnCode1 = 11; } @Override public void handleUncaught(Throwable t) { logger.log(Level.WARNING, null, t); returnCode1 = 12; } }); //LoggerManager.setEnableTimers(true); //LoggerManager.setTimerLogfile("/tmp/foo.autoplot.txt"); String currentTimeLabel; boolean firstTime = true; int countRecent = 20; // approx number in past minute do { t0s.add(System.currentTimeMillis()); while (t0s.size() > countRecent) { t0s.remove(0); } if (!firstTime) { atime = times.next(); } //LoggerManager.resetTimer(); returnCode1 = 0; int ic = atime.indexOf(": "); String exactTime = null; if (ic > -1) { // rfe batchfile time. exactTime = atime.substring(ic + 2); atime = atime.substring(0, ic); } //LoggerManager.markTime("455"); String filename = getFilename(params, "", atime); //LoggerManager.markTime("469"); count = count + 1; if (mon.isCancelled()) { break; } mon.setTaskProgress(count); FileChannel fileChannel = null; File outTemp = new File(filename + ".lock"); if (params.update) { File lockFile = new File(params.outputFolder + params.product + ".lock"); FileLock lock = null; if (lockFile.exists()) { Path p = Paths.get(lockFile.toURI()); fileChannel = FileChannel.open(p, StandardOpenOption.WRITE); lock = fileChannel.lock(); } File out = new File(filename); if (out.exists() || outTemp.exists()) { mon.setProgressMessage(String.format("skipping %s", filename)); logger.log(Level.FINE, String.format("skipping %s", filename)); if (lock != null) { lock.release(); fileChannel.close(); } if (firstTime) { // resetting zoomY and zoomZ can cause the labels and bounds to change. Turn off autoranging. dom2.getOptions().setAutolayout(false); appmodel.waitUntilIdle(); firstTime = false; } continue; } else { if (!outTemp.createNewFile()) { logger.log(Level.WARNING, "unable to make new file: {0}", outTemp); } } if (lock != null) { lock.release(); fileChannel.close(); } } else { if (!outTemp.createNewFile()) { logger.log(Level.WARNING, "unable to make new file: {0}", outTemp); } } currentTimeLabel="error"; //LoggerManager.markTime("486"); try { DatumRange dr; if (exactTime == null) { dr = tp.parse(atime).getTimeRange(); } else { dr = DatumRangeUtil.parseTimeRange(exactTime); } if (params.rescalex != null) { String rescalex = params.rescalex.trim(); if (rescalex.length() > 0 && !params.rescalex.equals("0%,100%")) { dr = DatumRangeUtil.rescale(dr, params.rescalex); } } currentTimeLabel = dr.toString(); if (!dom2.getTimeRange().equals(dr)) { // don't even call it for one png--I don't think it matters. dom2.setTimeRange(dr); } } catch (ParseException ex) { logger.log(Level.SEVERE, ex.getMessage(), ex); } mon.setProgressMessage(String.format("write %s", filename)); logger.log(Level.FINE, String.format("write %s", filename)); //LoggerManager.markTime("514"); appmodel.waitUntilIdle(); //LoggerManager.markTime("516"); if (params.autorange) { if (params.autorangeFlags) { for (Plot p : dom2.getPlots()) { if (p.getYaxis().isAutoRange()) { AutoplotUtil.resetZoomY(dom2, p); } if (p.getZaxis().isAutoRange()) { AutoplotUtil.resetZoomZ(dom2, p); } } } else { for (Plot p : dom2.getPlots()) { dom2.getController().setPlot(p); AutoplotUtil.resetZoomY(dom2); AutoplotUtil.resetZoomZ(dom2); } } } //LoggerManager.markTime("526"); appmodel.waitUntilIdle(); //LoggerManager.markTime("529"); if (firstTime) { // resetting zoomY and zoomZ can cause the labels and bounds to change. Turn off autoranging. dom2.getOptions().setAutolayout(false); appmodel.waitUntilIdle(); firstTime = false; } if (params.removeNoData) { if (!isDataVisible(dom2)) { logger.log(Level.FINE, "No data found for \"{0}\"", atime); if (!outTemp.delete()) { logger.log(Level.WARNING, "unable to delete {0}", outTemp); } continue; } } /** * Code for adding images into global arrayList for use in HTML * method * * @author Armond Luthens * @date 09/21/2015 */ pngFilenameArrayThumbs.add(getRelativeFilename(params, "thumbs100", atime)); pngFilenameArrayBig.add(getRelativeFilename(params, "", atime)); timeLabels.add(currentTimeLabel); BufferedImage image = null; //LoggerManager.markTime("538"); try { if (params.outputFormat.equals("png")) { image = myWriteToPng(filename, dom2, w0, h0); } else { dom2.getCanvases(0).getController().getDasCanvas().writeToPDF(filename); } } catch (IOException ex) { logger.log(Level.SEVERE, "unable to write file " + filename, ex); throw new IOException("unable to write file " + filename, ex); } //LoggerManager.markTime("548"); if (returnCode1 == 0) { returnCodeAll = 0; } else if (returnCodeAll == 10) { returnCodeAll = returnCode1; } if (params.createThumbs && params.outputFormat.equals("png")) { BufferedImage thumb400 = ImageResize.getScaledInstance(image, thumbW, thumbH, RenderingHints.VALUE_INTERPOLATION_BILINEAR, true); File outf = new java.io.File(getFilename(params, "thumbs400", atime)); File parentf = outf.getParentFile(); if (parentf != null && !parentf.exists()) { if (!parentf.mkdirs()) { throw new IllegalArgumentException("failed to make directories: " + parentf); } } if (!ImageIO.write(thumb400, "png", outf)) { throw new IllegalArgumentException("no appropriate writer is found"); } BufferedImage thumb100 = ImageResize.getScaledInstance(thumb400, thumbW / 4, thumbH / 4, RenderingHints.VALUE_INTERPOLATION_BILINEAR, true); outf = new java.io.File(getFilename(params, "thumbs100", atime)); parentf = outf.getParentFile(); if (parentf != null && !parentf.exists()) { if (!parentf.mkdirs()) { throw new IllegalArgumentException("failed to make directories: " + parentf); } } if (!ImageIO.write(thumb100, "png", outf)) { throw new IllegalArgumentException("no appropriate writer is found"); } } //LoggerManager.markTime("581"); double imagesPerSec = t0s.size() * 1000. / (java.lang.System.currentTimeMillis() - t0s.get(0)); double etaSec = (n - count) / imagesPerSec; String etaStr = ""; if (count > 3) { Datum eta = org.das2.datum.DatumUtil.asOrderOneUnits(Units.seconds.createDatum(etaSec)); DatumFormatter df; df = new FormatStringFormatter("%.1f", true); etaStr = String.format(Locale.US, ", eta %s", df.format(eta)); } if (imagesPerSec < 1.0) { mon.setAdditionalInfo(String.format(Locale.US, "(%.1f/min%s)", imagesPerSec * 60, etaStr)); } else { mon.setAdditionalInfo(String.format(Locale.US, "(%.1f/sec%s)", imagesPerSec, etaStr)); } if (!outTemp.delete()) { logger.log(Level.WARNING, "unable to delete {0}", outTemp); } //LoggerManager.markTime("597"); } while (times.hasNext()); //LoggerManager.setEnableTimers(false); if (!mon.isCancelled()) { writeHTMLFile(params, pngFilenameArrayThumbs, pngFilenameArrayBig, timeLabels); } } finally { if (!mon.isFinished()) { mon.finished(); } } return returnCodeAll; } /** * create the filename for the time. * * @param params the parameters * @param thumbdir "" or "thumbs100" or "thumbs400" * @param atime the time "20150822" * @return * @throws IllegalArgumentException */ private static String getFilename(Params params, String thumbdir, String atime) throws IllegalArgumentException { String filename; if (thumbdir.length() > 0 && !thumbdir.endsWith("/")) { thumbdir = thumbdir + "/"; } if (params.useBatchUri && params.batchUriName.equals("$o")) { String name = atime; // really? // sometimes we want capitalized extention. String outputFormat = params.outputFormat; if (name.toLowerCase().endsWith(params.outputFormat)) { outputFormat = name.substring(name.length() - outputFormat.length()); name = name.substring(0, name.length() - (params.outputFormat.length() + 1)); } filename = String.format("%s%s%s.%s", params.outputFolder, thumbdir, name, outputFormat); } else if (params.useBatchUri && !params.batchUriName.equals("")) { throw new IllegalArgumentException("batchUriName must be \"\" or \"$o\""); } else { String vers = (params.version == null || params.version.trim().length() == 0) ? "" : "_" + params.version.trim(); filename = String.format("%s%s%s_%s%s.%s", params.outputFolder, thumbdir, params.product, atime, vers, params.outputFormat); } return filename; } /** * create the filename for the time. * * @param params the parameters * @param thumbdir "" or "thumbs100" or "thumbs400" * @param atime the time "20150822" * @return * @throws IllegalArgumentException */ private static String getRelativeFilename(Params params, String thumbdir, String atime) throws IllegalArgumentException { String filename; if (thumbdir.length() > 0 && !thumbdir.endsWith("/")) { thumbdir = thumbdir + "/"; } if (params.useBatchUri && params.batchUriName.equals("$o")) { String name = atime; // really? // sometimes we want capitalized extention. String outputFormat = params.outputFormat; if (name.toLowerCase().endsWith(params.outputFormat)) { outputFormat = name.substring(name.length() - outputFormat.length()); name = name.substring(0, name.length() - (params.outputFormat.length() + 1)); } filename = String.format("%s%s.%s", thumbdir, name, outputFormat); } else if (params.useBatchUri && !params.batchUriName.equals("")) { throw new IllegalArgumentException("batchUriName must be \"\" or \"$o\""); } else { String vers = (params.version == null || params.version.trim().length() == 0) ? "" : "_" + params.version.trim(); filename = String.format("%s%s_%s%s.%s", thumbdir, params.product, atime, vers, params.outputFormat); } return filename; } /** * run the pngwalk. If the params are null, then prompt the user with a GUI. * The pngwalk is run by resetting the timeRange field of the vap to each * step of the sequence. * * @param dom the state from which a pngwalk is to be produced. * @param params a parameters structure (e.g. batch processing) or null. * @return an integer exit code where 0=success, 10=bad time format, * 11=caught exception, 12=uncaught exception * @throws ParseException * @throws IOException * @throws InterruptedException */ public static int doIt(Application dom, Params params) throws ParseException, IOException, InterruptedException { int status = 0; if (params == null) { CreatePngWalkDialog p = new CreatePngWalkDialog(); if (AutoplotUtil.showConfirmDialog(ScriptContext.getViewWindow(), p, "Create PngWalk Options", JOptionPane.OK_CANCEL_OPTION) == JOptionPane.OK_OPTION) { p.writeDefaults(); params = p.getParams(); File ff = new File(params.outputFolder); if (p.getOverwriteCb().isSelected() && ff.exists()) { FileUtil.deleteFileTree(ff); } ProgressMonitor mon; if (ScriptContext.getViewWindow() == null) { mon = new NullProgressMonitor(); System.err.println("ScriptContext.getViewWindow is null, running quietly in the background."); } else { mon = DasProgressPanel.createFramed(ScriptContext.getViewWindow(), "running batch"); } if (params.timeFormat.length() > 0) { TimeParser tp = TimeParser.create(params.timeFormat); if (!tp.isNested()) { JOptionPane.showMessageDialog(ScriptContext.getViewWindow(), "Time spec must have fields nested: $Y,$m,$d, etc,
not " + params.timeFormat + " ."); return -1; } } String[] times = getListOfTimes(params, new ArrayList()); status = doBatch(times, dom, params, mon); String url; if (!mon.isCancelled()) { url = new File(params.outputFolder).toURI().toString(); if (ScriptContext.getViewWindow() != null && params.outputFormat.equals("png")) { logger.log(Level.FINE, "version=\"{0}\"", String.valueOf(params.version)); String vers = (params.version == null || params.version.trim().length() == 0) ? "" : "_" + params.version.trim(); String st1; if (params.batchUriName.length() == 0) { st1 = url + params.product + "_" + params.timeFormat + vers + ".png"; } else { st1 = url + "*.png"; } final String st = st1; SwingUtilities.invokeLater(new Runnable() { @Override public void run() { PngWalkTool.start(st, ScriptContext.getViewWindow()); } }); } else if (ScriptContext.getViewWindow() != null) { String vers = (params.version == null || params.version.trim().length() == 0) ? "" : "_" + params.version.trim(); final String st = url + params.product + "_" + params.timeFormat + vers + "." + params.outputFormat; JOptionPane.showMessageDialog(ScriptContext.getViewWindow(), "Files created:
" + st); } } } } else { String[] times = getListOfTimes(params, new ArrayList()); ProgressMonitor mon; if (ScriptContext.getViewWindow() == null) { if ("true".equals(System.getProperty("java.awt.headless", "false"))) { mon = new NullProgressMonitor(); } else { mon = DasProgressPanel.createFramed("running batch"); } } else { mon = DasProgressPanel.createFramed(ScriptContext.getViewWindow(), "running batch"); } status = doBatch(times, dom, params, mon); } return status; } /** * Method to write HTML file of all the pictures to give a gallery view * * @author Armond Luthens * @param params * @param pngFilenameArrayThumbs * @param pngFilenameArrayBig * @param timeLabels * */ public static void writeHTMLFile(Params params, ArrayList pngFilenameArrayThumbs, ArrayList pngFilenameArrayBig, ArrayList timeLabels) { if (params.update || (timeLabels.size() != pngFilenameArrayBig.size())) { logger.info("skipping create HTML step because of partial run"); return; } String filePath = params.outputFolder + "" + params.product + ".html"; //String filePath = "pngImagePage2.html"; File f = new File(filePath); String htmlOpen = "\n"; String htmlHead = "\tPNG Gallery " + params.product + "\n"; String htmlBody = "\t\n"; String htmlClose1 = "\t\t\n"; String htmlClose2 = "\t\n"; String htmlClose3 = ""; //String pageHeaderOpen= "\t\t
\n\t\t\t" // + "" + params.product + "_"+ params.timeFormat + "\n" + "\t\t
\n"; String pageHeaderOpen = "\t\t
\n\t\t\t" + "" + "PNG WALK" + "\n" + "\t\t
\n"; String addImageString; String htmlAnchorStringOpen = "\t\t\t\t\n"; String htmlImageStringOpen = "\t\t\t\t\n"; String htmlImageCaptionOpen = "\t\t\t\t
"; String htmlImageCaptionClose = "\t\t\t\t
\n"; String htmlImageContainer = "\t\t
\n"; String htmlFigureOpen = "\t\t\t
\n"; String htmlFigureClose = "\t\t\t
\n"; String currentPngFilename; String currentPngFilenameBIG; String fileNameToDisplay; String bigImageLink; String fullImageCaption; int count = 0; try (BufferedWriter bw = new BufferedWriter(new FileWriter(f))) { bw.write(htmlOpen); bw.write(htmlHead); bw.write(htmlBody); bw.write(pageHeaderOpen); bw.write(htmlImageContainer); for (String pngFilenameArray1 : pngFilenameArrayThumbs) { currentPngFilename = pngFilenameArray1; //System.out.println("image file path: " + currentPngFilename); currentPngFilenameBIG = pngFilenameArrayBig.get(count); fileNameToDisplay = timeLabels.get(count); count++; bigImageLink = htmlAnchorStringOpen + currentPngFilenameBIG + htmlAnchorStringClose; addImageString = htmlImageStringOpen + currentPngFilename + htmlImageStringClose; //insert image into html code fullImageCaption = htmlImageCaptionOpen + fileNameToDisplay + htmlImageCaptionClose; //insert corresponding date for image into html code bw.write(htmlFigureOpen); bw.write(bigImageLink); bw.write(addImageString); bw.write(fullImageCaption); bw.write(htmlFigureClose); } bw.write(htmlClose1); bw.write(htmlClose2); bw.write(htmlClose3); } catch (IOException e) { logger.log(Level.WARNING, e.getMessage(), e); } } /** * command-line support for creating PNGWalks. When PNGWalks are created * interactively in Autoplot, this is used as well. * * @param args see the code for the argument list. * @throws InterruptedException * @throws ParseException * @throws IOException */ public static void main(String[] args) throws InterruptedException, ParseException, IOException { System.err.println("CreatePngWalk 20200819"); final ArgumentList alm = new ArgumentList("CreatePngWalk"); alm.addOptionalSwitchArgument("timeFormat", "f", "timeFormat", "$Y$m$d", "timeformat for png files, e.g. $Y is year, $j is day of year"); alm.addOptionalSwitchArgument("timeRange", "r", "timeRange", "", "time range to cover, e.g. 2011 through 2012"); alm.requireOneOf(new String[]{"timeRange", "batchUri"}); alm.addOptionalSwitchArgument("batchUri", "b", "batchUri", "", "optionally provide list of timeranges"); alm.addOptionalSwitchArgument("batchUriName", null, "batchUriName", "", "use $o to use the filename in the batch file"); alm.addOptionalSwitchArgument("createThumbs", "t", "createThumbs", "y", "create thumbnails, y (default) or n"); alm.addOptionalSwitchArgument("product", "n", "product", "product", "product name in each filename (default=product)"); alm.addOptionalSwitchArgument("outputFolder", "o", "outputFolder", "pngwalk", "location of root of pngwalk"); alm.addOptionalSwitchArgument("outputFormat", null, "outputFormat", "png", "output format png or pdf"); alm.addOptionalSwitchArgument("vap", "v", "vap", null, "vap file to plot"); alm.addOptionalSwitchArgument("uri", "u", "uri", null, "single URI plotted"); alm.requireOneOf(new String[]{"vap", "uri"}); alm.addOptionalSwitchArgument("rescalex", null, "rescalex", "0%,100%", "rescale factor, such as '0%-1hr,100%+1hr', to provide context to each image"); alm.addOptionalSwitchArgument("version", null, "version", null, "additional version string to add to each filename, like v1.0"); alm.addBooleanSwitchArgument("autorange", null, "autorange", "rerange dependent dimensions Y and Z"); alm.addBooleanSwitchArgument("autorangeFlags", null, "autorangeFlags", "only autorange axes with autorange=true"); alm.addBooleanSwitchArgument("update", null, "update", "only calculate missing images"); alm.addBooleanSwitchArgument("removeNoData", null, "removeNoData", "don't produce images which have no visible data."); alm.addBooleanSwitchArgument("testException", null, "testException", "throw a runtime exception to test exit code"); if (!alm.process(args)) { System.exit(alm.getExitCode()); } if (alm.getBooleanValue("testException")) { throw new RuntimeException("--textException on command line, throwing exception"); // verified, 20130627. // java -cp autoplot.jar org.autoplot.pngwalk.CreatePngWalk --vap=x --testException // echo $? -> 1 // Note, no files found does not yeild non-zero exit code! } if (System.getProperty("noCheckCertificate", "true").equals("true")) { logger.fine("disabling HTTP certificate checks."); try { TrustManager[] trustAllCerts = new TrustManager[]{ new X509TrustManager() { @Override public java.security.cert.X509Certificate[] getAcceptedIssuers() { return new java.security.cert.X509Certificate[0]; } @Override public void checkClientTrusted(X509Certificate[] certs, String authType) { } @Override public void checkServerTrusted(X509Certificate[] certs, String authType) { } } }; SSLContext sc = SSLContext.getInstance("SSL"); sc.init(null, trustAllCerts, new java.security.SecureRandom()); HttpsURLConnection.setDefaultSSLSocketFactory(sc.getSocketFactory()); // Create all-trusting host name verifier HostnameVerifier allHostsValid = new HostnameVerifier() { @Override public boolean verify(String hostname, SSLSession session) { return true; } }; HttpsURLConnection.setDefaultHostnameVerifier(allHostsValid); } catch (NoSuchAlgorithmException | KeyManagementException ex) { logger.log(Level.SEVERE, ex.getMessage(), ex); } } Params params = new Params(); params.createThumbs = alm.getValue("createThumbs").equals("y"); params.outputFolder = alm.getValue("outputFolder"); params.product = alm.getValue("product"); params.timeFormat = alm.getValue("timeFormat"); params.timeRangeStr = alm.getValue("timeRange"); params.rescalex = alm.getValue("rescalex"); params.version = alm.getValue("version"); params.autorange = alm.getBooleanValue("autorange"); params.autorangeFlags = alm.getBooleanValue("autorangeFlags"); params.update = alm.getBooleanValue("update"); params.batchUri = alm.getValue("batchUri"); params.removeNoData = alm.getBooleanValue("removeNoData"); if (params.batchUri != null && params.batchUri.length() > 0) { params.useBatchUri = true; params.batchUriName = alm.getValue("batchUriName"); } params.outputFormat = alm.getValue("outputFormat"); Application dom; String vap = alm.getValue("vap"); if (vap != null) { if ((vap.length() > 2 && vap.charAt(1) == ':')) { logger.fine("reference appears to be absolute (Windows)"); } else { vap = URISplit.makeAbsolute(new File(".").getAbsolutePath(), vap); } dom = (Application) StatePersistence.restoreState(new File(vap)); } else { String uri = alm.getValue("uri"); ScriptContext.setCanvasSize(800, 600); ScriptContext.plot(uri); dom = ScriptContext.getDocumentModel(); } if (vap != null && vap.contains(params.outputFolder)) { params.writeVap = false; } int status = doIt(dom, params); System.exit(status); // something starts up thread that prevents java from exiting. } }